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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
62
total RNA-seq
45
ATAC-seq
23
DNase-seq
21
pCHi-C
10
snATAC-seq
9
RRBS
9
single cell RNA-seq
9
small RNA-seq
4
Hi-C
4
MeRIP-seq
3
FAIRE-seq
2
snDrop-seq
1
WGBS
Assay category
151
DNA binding
81
DNA accessibility
80
Transcription
10
DNA methylation
4
3D chromatin structure
Target of assay
96
histone
96
histone modification
66
narrow histone mark
47
transcription factor
30
broad histone mark
10
control
4
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
66
October, 2019
32
December, 2017
29
August, 2017
29
February, 2023
29
July, 2019
28
March, 2020
25
February, 2020
21
June, 2019
20
November, 2019
10
May, 2019
8
February, 2021
8
October, 2018
7
October, 2017
6
April, 2018
6
August, 2021
6
November, 2018
5
March, 2019
4
November, 2020
3
January, 2021
3
May, 2021
2
April, 2019
2
July, 2018
2
May, 2022
2
September, 2017
Available data
231
bam
206
bigWig
170
bed narrowPeak
89
tsv
87
fastq
82
bigBed narrowPeak
50
bed bed3+
46
tagAlign
24
bed broadPeak
22
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
5
bed bed3
5
txt
3
bedpe bed3+
3
hic
1
bedpe
1
csv
1
tagAlign bed3+
Organism
353
Homo sapiens
Biosample type
476
primary cell
463
cell line
353
tissue
183
in vitro differentiated cells
4
stem cell
Organ
102
pancreas
79
brain
53
liver
29
heart
16
blood vessel
16
vasculature
15
adipose tissue
15
connective tissue
14
kidney
10
musculature of body
8
bone element
8
limb
8
skeleton
7
artery
3
eye
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
327
AMP
26
T1D
Genome assembly (visualization)
243
hg19
226
GRCh38
Lab
315
AMP-T2D consortium
22
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
1
inconsistent control read length
replication_type!
unreplicated
BIOSAMPLE
ASSAY
353 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
snATAC-seq
RRBS
single cell RNA-seq
small RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
snDrop-seq
WGBS
tissue
islet of Langerhans
22
10
37
1
3
1
6
2
4
liver
42
3
1
1
1
1
brain
11
1
1
2
1
heart
5
3
4
1
1
1
kidney
1
2
4
1
1
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