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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 151ChIP-seq
  • 62total RNA-seq
  • 45ATAC-seq
  • 23DNase-seq
  • 21pCHi-C
  • 10snATAC-seq
  • 9RRBS
  • 9single cell RNA-seq
  • 9small RNA-seq
  • 4Hi-C
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2snDrop-seq
  • 1WGBS
Assay category
  • 151DNA binding
  • 81DNA accessibility
  • 80Transcription
  • 10DNA methylation
  • 43D chromatin structure
Target of assay
  • 96histone
  • 96histone modification
  • 66narrow histone mark
  • 47transcription factor
  • 30broad histone mark
  • 10control
  • 4RNA binding protein
  • 2chromatin remodeller
  • 2nucleotide modification
Date released
  • 66October, 2019
  • 32December, 2017
  • 29August, 2017
  • 29February, 2023
  • 29July, 2019
  • 28March, 2020
  • 25February, 2020
  • 21June, 2019
  • 20November, 2019
  • 10May, 2019
  • 8February, 2021
  • 8October, 2018
  • 7October, 2017
  • 6April, 2018
  • 6August, 2021
  • 6November, 2018
  • 5March, 2019
  • 4November, 2020
  • 3January, 2021
  • 3May, 2021
  • 2April, 2019
  • 2July, 2018
  • 2May, 2022
  • 2September, 2017
Available data
  • 231bam
  • 206bigWig
  • 170bed narrowPeak
  • 89tsv
  • 87fastq
  • 82bigBed narrowPeak
  • 50bed bed3+
  • 46tagAlign
  • 24bed broadPeak
  • 22bigBed broadPeak
  • 9bed bedMethyl
  • 9bigBed bedMethyl
  • 5bed bed3
  • 5txt
  • 3bedpe bed3+
  • 3hic
  • 1bedpe
  • 1csv
  • 1tagAlign bed3+
Organism
  • 353Homo sapiens
Biosample type
  • 476primary cell
  • 463cell line
  • 353tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 102pancreas
  • 79brain
  • 53liver
  • 29heart
  • 16blood vessel
  • 16vasculature
  • 15adipose tissue
  • 15connective tissue
  • 14kidney
  • 10musculature of body
  • 8bone element
  • 8limb
  • 8skeleton
  • 7artery
  • 3eye
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 327AMP
  • 26T1D
Genome assembly (visualization)
  • 243hg19
  • 226GRCh38
Lab
  • 315AMP-T2D consortium
  • 22Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 4inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 1inconsistent control read length
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

353 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
snATAC-seq
RRBS
single cell RNA-seq
small RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
snDrop-seq
WGBS
tissue
islet of Langerhans221037131624
liver4231111
brain111121
heart534111
kidney12411
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