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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
59
total RNA-seq
26
ATAC-seq
22
DNase-seq
20
pCHi-C
9
single cell RNA-seq
9
small RNA-seq
4
Hi-C
4
MeRIP-seq
3
FAIRE-seq
3
snATAC-seq
2
snDrop-seq
Assay category
81
DNA binding
77
Transcription
54
DNA accessibility
4
3D chromatin structure
Target of assay
60
histone
60
histone modification
50
narrow histone mark
16
transcription factor
10
broad histone mark
7
control
4
RNA binding protein
2
nucleotide modification
Date released
44
October, 2019
29
February, 2023
28
March, 2020
26
August, 2017
25
February, 2020
22
July, 2019
20
June, 2019
8
February, 2021
7
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2017
2
August, 2021
2
July, 2018
2
May, 2021
2
May, 2022
2
November, 2018
2
September, 2017
1
April, 2019
1
November, 2019
1
October, 2018
Available data
138
bam
135
bigWig
86
tsv
83
bed narrowPeak
49
bed bed3+
46
tagAlign
44
fastq
29
bigBed narrowPeak
23
bed broadPeak
21
bigBed broadPeak
5
bed bed3
5
txt
3
bedpe bed3+
3
hic
1
bedpe
1
csv
1
tagAlign bed3+
Organism
242
Homo sapiens
Biosample type
302
primary cell
242
tissue
112
in vitro differentiated cells
1
stem cell
Organ
71
brain
71
pancreas
19
heart
15
adipose tissue
15
connective tissue
12
liver
9
kidney
8
bone element
8
skeleton
7
musculature of body
4
blood vessel
4
vasculature
3
eye
3
limb
2
artery
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
220
AMP
22
T1D
Genome assembly (visualization)
145
hg19
136
GRCh38
Lab
212
AMP-T2D consortium
18
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
BIOSAMPLE
ASSAY
242 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
snATAC-seq
snDrop-seq
tissue
islet of Langerhans
22
10
18
1
6
2
4
2
liver
6
2
1
1
1
brain
6
1
2
heart
2
4
1
1
1
frontal cortex
2
2
1
1
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