Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81ChIP-seq
  • 59total RNA-seq
  • 26ATAC-seq
  • 22DNase-seq
  • 20pCHi-C
  • 9single cell RNA-seq
  • 9small RNA-seq
  • 4Hi-C
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 3snATAC-seq
  • 2snDrop-seq
Assay category
  • 81DNA binding
  • 77Transcription
  • 54DNA accessibility
  • 43D chromatin structure
Target of assay
  • 60histone
  • 60histone modification
  • 50narrow histone mark
  • 16transcription factor
  • 10broad histone mark
  • 7control
  • 4RNA binding protein
  • 2nucleotide modification
Date released
  • 44October, 2019
  • 29February, 2023
  • 28March, 2020
  • 26August, 2017
  • 25February, 2020
  • 22July, 2019
  • 20June, 2019
  • 8February, 2021
  • 7October, 2017
  • 6April, 2018
  • 5March, 2019
  • 4November, 2020
  • 3December, 2017
  • 2August, 2021
  • 2July, 2018
  • 2May, 2021
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1November, 2019
  • 1October, 2018
Available data
  • 138bam
  • 135bigWig
  • 86tsv
  • 83bed narrowPeak
  • 49bed bed3+
  • 46tagAlign
  • 44fastq
  • 29bigBed narrowPeak
  • 23bed broadPeak
  • 21bigBed broadPeak
  • 5bed bed3
  • 5txt
  • 3bedpe bed3+
  • 3hic
  • 1bedpe
  • 1csv
  • 1tagAlign bed3+
Organism
  • 242Homo sapiens
Biosample type
  • 302primary cell
  • 242tissue
  • 112in vitro differentiated cells
  • 1stem cell
Organ
  • 71brain
  • 71pancreas
  • 19heart
  • 15adipose tissue
  • 15connective tissue
  • 12liver
  • 9kidney
  • 8bone element
  • 8skeleton
  • 7musculature of body
  • 4blood vessel
  • 4vasculature
  • 3eye
  • 3limb
  • 2artery
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 220AMP
  • 22T1D
Genome assembly (visualization)
  • 145hg19
  • 136GRCh38
Lab
  • 212AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
BIOSAMPLE
ASSAY

242 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
snATAC-seq
snDrop-seq
tissue
islet of Langerhans22101816242
liver62111
brain612
heart24111
frontal cortex2211
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego