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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
19
ATAC-seq
9
RRBS
7
snATAC-seq
3
total RNA-seq
1
DNase-seq
1
WGBS
1
pCHi-C
Assay category
70
DNA binding
27
DNA accessibility
10
DNA methylation
3
Transcription
Target of assay
36
histone
36
histone modification
31
transcription factor
20
broad histone mark
16
narrow histone mark
3
control
2
chromatin remodeller
Date released
29
December, 2017
22
October, 2019
19
November, 2019
10
May, 2019
7
July, 2019
7
October, 2018
4
August, 2021
4
November, 2018
3
August, 2017
3
January, 2021
1
April, 2019
1
June, 2019
1
May, 2021
Available data
93
bam
87
bed narrowPeak
71
bigWig
53
bigBed narrowPeak
43
fastq
9
bed bedMethyl
9
bigBed bedMethyl
3
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
111
Homo sapiens
Biosample type
463
cell line
174
primary cell
111
tissue
71
in vitro differentiated cells
3
stem cell
Organ
41
liver
31
pancreas
12
blood vessel
12
vasculature
10
heart
8
brain
5
artery
5
kidney
5
limb
3
musculature of body
1
pericardium
1
thymus
Project
107
AMP
4
T1D
Genome assembly (visualization)
98
hg19
90
GRCh38
Lab
103
AMP-T2D consortium
4
Katalin Susztak, Upenn
4
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
ATAC-seq
RRBS
snATAC-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
liver
36
1
1
islet of Langerhans
19
1
1
body of pancreas
7
brain
5
1
1
thoracic aorta
7
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