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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 70ChIP-seq
  • 19ATAC-seq
  • 9RRBS
  • 7snATAC-seq
  • 3total RNA-seq
  • 1DNase-seq
  • 1WGBS
  • 1pCHi-C
Assay category
  • 70DNA binding
  • 27DNA accessibility
  • 10DNA methylation
  • 3Transcription
Target of assay
  • 36histone
  • 36histone modification
  • 31transcription factor
  • 20broad histone mark
  • 16narrow histone mark
  • 3control
  • 2chromatin remodeller
Date released
  • 29December, 2017
  • 22October, 2019
  • 19November, 2019
  • 10May, 2019
  • 7July, 2019
  • 7October, 2018
  • 4August, 2021
  • 4November, 2018
  • 3August, 2017
  • 3January, 2021
  • 1April, 2019
  • 1June, 2019
  • 1May, 2021
Available data
  • 93bam
  • 87bed narrowPeak
  • 71bigWig
  • 53bigBed narrowPeak
  • 43fastq
  • 9bed bedMethyl
  • 9bigBed bedMethyl
  • 3tsv
  • 1bed bed3+
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 111Homo sapiens
Biosample type
  • 463cell line
  • 174primary cell
  • 111tissue
  • 71in vitro differentiated cells
  • 3stem cell
Organ
  • 41liver
  • 31pancreas
  • 12blood vessel
  • 12vasculature
  • 10heart
  • 8brain
  • 5artery
  • 5kidney
  • 5limb
  • 3musculature of body
  • 1pericardium
  • 1thymus
Project
  • 107AMP
  • 4T1D
Genome assembly (visualization)
  • 98hg19
  • 90GRCh38
Lab
  • 103AMP-T2D consortium
  • 4Katalin Susztak, Upenn
  • 4Kyle Gaulton, UCSD
Audit category:
  • 27inconsistent control
Audit category:
  • 1inconsistent control read length
BIOSAMPLE
ASSAY

111 results

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Clear Filters
ChIP-seq
ATAC-seq
RRBS
snATAC-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
liver3611
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
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