Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
969
total RNA-seq
756
ChIP-seq
215
ATAC-seq
171
single cell RNA-seq
155
DNase-seq
87
RNA microarray
26
WGBS
18
snATAC-seq
12
Hi-C
7
small RNA-seq
4
pCHi-C
2
RRBS
1
FAIRE-seq
1
snDrop-seq
Assay category
1147
Transcription
756
DNA binding
389
DNA accessibility
28
DNA methylation
12
3D chromatin structure
Target of assay
532
histone modification
531
histone
273
broad histone mark
258
narrow histone mark
177
control
47
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
Date released
537
February, 2021
255
August, 2017
223
August, 2021
193
May, 2020
176
October, 2019
142
June, 2019
118
July, 2018
105
May, 2019
82
November, 2017
78
April, 2019
66
February, 2023
66
October, 2018
64
May, 2022
48
July, 2019
47
September, 2023
40
May, 2024
37
May, 2021
20
November, 2018
20
November, 2019
19
April, 2020
16
December, 2017
16
October, 2017
15
May, 2023
12
March, 2020
7
December, 2018
7
January, 2019
5
January, 2021
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1676
bam
1566
bigWig
987
tsv
814
bed narrowPeak
479
bigBed narrowPeak
290
fastq
192
tagAlign
189
bed broadPeak
155
bed bed3+
154
bigBed broadPeak
152
txt
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
8
hic
7
bedpe bed3+
5
csv
Organism
2415
Homo sapiens
Biosample type
2424
tissue
612
primary cell
211
in vitro differentiated cells
199
cell line
6
stem cell
Organ
532
connective tissue
473
adipose tissue
403
pancreas
308
liver
285
kidney
284
heart
186
brain
150
bone element
117
blood vessel
117
vasculature
114
limb
72
musculature of body
66
artery
53
eye
42
nerve
24
spleen
19
lung
18
ureter
15
epithelium
8
skeleton
4
gonad
4
ovary
1
lymph node
1
pituitary gland
1
skin of body
Project
2353
AMP
47
KPMP
19
LungMap
5
T1D
Genome assembly (visualization)
1633
GRCh38
1512
hg19
Lab
2110
AMP-T2D consortium
138
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
2424 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
Hi-C
small RNA-seq
pCHi-C
RRBS
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
2
1
3
islet of Langerhans
282
49
31
4
1
4
1
liver
164
103
20
1
3
1
1
kidney
49
26
75
64
11
2
1
bone element
84
+ See 123 more…
See all biosamples
Download