Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 969total RNA-seq
  • 756ChIP-seq
  • 215ATAC-seq
  • 171single cell RNA-seq
  • 155DNase-seq
  • 87RNA microarray
  • 26WGBS
  • 18snATAC-seq
  • 12Hi-C
  • 7small RNA-seq
  • 4pCHi-C
  • 2RRBS
  • 1FAIRE-seq
  • 1snDrop-seq
Assay category
  • 1147Transcription
  • 756DNA binding
  • 389DNA accessibility
  • 28DNA methylation
  • 123D chromatin structure
Target of assay
  • 532histone modification
  • 531histone
  • 273broad histone mark
  • 258narrow histone mark
  • 177control
  • 47transcription factor
  • 24RNA binding protein
  • 3other context
  • 3other post-translational modification
Date released
  • 537February, 2021
  • 255August, 2017
  • 223August, 2021
  • 193May, 2020
  • 176October, 2019
  • 142June, 2019
  • 118July, 2018
  • 105May, 2019
  • 82November, 2017
  • 78April, 2019
  • 66February, 2023
  • 66October, 2018
  • 64May, 2022
  • 48July, 2019
  • 47September, 2023
  • 40May, 2024
  • 37May, 2021
  • 20November, 2018
  • 20November, 2019
  • 19April, 2020
  • 16December, 2017
  • 16October, 2017
  • 15May, 2023
  • 12March, 2020
  • 7December, 2018
  • 7January, 2019
  • 5January, 2021
  • 4September, 2017
  • 3December, 2019
  • 2January, 2018
  • 1August, 2022
Available data
  • 1676bam
  • 1566bigWig
  • 987tsv
  • 814bed narrowPeak
  • 479bigBed narrowPeak
  • 290fastq
  • 192tagAlign
  • 189bed broadPeak
  • 155bed bed3+
  • 154bigBed broadPeak
  • 152txt
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 8hic
  • 7bedpe bed3+
  • 5csv
Organism
  • 2415Homo sapiens
Biosample type
  • 2424tissue
  • 612primary cell
  • 211in vitro differentiated cells
  • 199cell line
  • 6stem cell
Organ
  • 532connective tissue
  • 473adipose tissue
  • 403pancreas
  • 308liver
  • 285kidney
  • 284heart
  • 186brain
  • 150bone element
  • 117blood vessel
  • 117vasculature
  • 114limb
  • 72musculature of body
  • 66artery
  • 53eye
  • 42nerve
  • 24spleen
  • 19lung
  • 18ureter
  • 15epithelium
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 2353AMP
  • 47KPMP
  • 19LungMap
  • 5T1D
Genome assembly (visualization)
  • 1633GRCh38
  • 1512hg19
Lab
  • 2110AMP-T2D consortium
  • 138Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 30Kyle Gaulton, UCSD
  • 19Xin Sun, UCSD
Audit category:
  • 87inconsistent ontology term
  • 8audit script error
Audit category:
  • 12missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

2424 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
Hi-C
small RNA-seq
pCHi-C
RRBS
FAIRE-seq
snDrop-seq
tissue
adipose tissue382213
islet of Langerhans28249314141
liver164103201311
kidney492675641121
bone element84
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego