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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1031total RNA-seq
  • 583ChIP-seq
  • 260ATAC-seq
  • 180single cell RNA-seq
  • 178DNase-seq
  • 87RNA microarray
  • 28snATAC-seq
  • 27WGBS
  • 25pCHi-C
  • 16Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
Assay category
  • 1227Transcription
  • 583DNA binding
  • 470DNA accessibility
  • 38DNA methylation
  • 163D chromatin structure
Target of assay
  • 628histone modification
  • 627histone
  • narrow histone mark
  • 303broad histone mark
  • 187control
  • 94transcription factor
  • 28RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
  • 2nucleotide modification
Date released
  • 545February, 2021
  • 234August, 2017
  • 229August, 2021
  • 166May, 2020
  • 163June, 2019
  • 120July, 2018
  • 113October, 2019
  • 95February, 2023
  • 82May, 2019
  • 77July, 2019
  • 66May, 2022
  • 63October, 2018
  • 57April, 2019
  • 54November, 2017
  • 47September, 2023
  • 46December, 2017
  • 40May, 2021
  • 40November, 2019
  • 38March, 2020
  • 26November, 2018
  • 25February, 2020
  • 25May, 2024
  • 21October, 2017
  • 19April, 2020
  • 15May, 2023
  • 8January, 2021
  • 7December, 2018
  • 6April, 2018
  • 6September, 2017
  • 5January, 2019
  • 5March, 2019
  • 4November, 2020
  • 3December, 2019
  • 2January, 2018
  • 1August, 2022
Available data
  • 1664bam
  • 1504bigWig
  • 1076tsv
  • 718bed narrowPeak
  • 453bigBed narrowPeak
  • 349fastq
  • 199bed bed3+
  • 198bed broadPeak
  • 176bigBed broadPeak
  • 157txt
  • 128tagAlign
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
Organism
  • 2446Homo sapiens
Biosample type
  • 2453tissue
  • 973primary cell
  • 643cell line
  • 339in vitro differentiated cells
  • 9stem cell
Organ
  • 534connective tissue
  • 476adipose tissue
  • 473pancreas
  • 317liver
  • 289kidney
  • 275heart
  • 158bone element
  • 151brain
  • 115blood vessel
  • 115vasculature
  • 107limb
  • 73musculature of body
  • 67artery
  • 54eye
  • 35nerve
  • 23spleen
  • 20lung
  • 18ureter
  • 16skeleton
  • 15epithelium
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2358AMP
  • 47KPMP
  • 29T1D
  • 19LungMap
Genome assembly (visualization)
  • 1608GRCh38
  • 1516hg19
Lab
  • 2116AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 25Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 89inconsistent ontology term
  • 27inconsistent control
  • 9audit script error
Audit category:
  • 22missing controlled_by
Audit category:
  • 3inconsistent control read length
  • 1inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

2453 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans292346861743114
adipose tissue3821331
liver167103201231111
kidney49177564136111
bone element84
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