Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Embedding Matrix

Click or enter search terms to filter the experiments included in the matrix.

Embeddings type
  • 54Gene expression
  • 3Accessible chromatin
Date released
  • 30May, 2022
  • 9June, 2025
  • 4April, 2025
  • 4February, 2025
  • 1August, 2021
  • 1February, 2021
  • 1February, 2023
  • 1March, 2023
  • 1March, 2024
  • 1November, 2021
  • 1October, 2024
  • 1September, 2020
  • 1September, 2021
  • 1September, 2023
Available data
  • 42h5ad
  • 13rds
  • 4mtx
  • 3tsv
Organism
  • 54Homo sapiens
Biosample type
  • 51tissue
  • 6primary cell
Organ
  • 7pancreas
  • 5connective tissue
  • 5musculature of body
  • 4adipose tissue
  • 4heart
  • 4liver
  • 4vasculature
  • 3artery
  • 3blood vessel
  • 3kidney
  • 2blood
  • 2bodily fluid
  • 2epithelium
  • 2intestine
  • 2lung
  • 2mouth
  • 1bone element
  • 1bone marrow
  • 1brain
  • 1eye
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1prostate gland
  • 1skin of body
  • 1small intestine
  • 1spleen
  • 1thymus
  • 1tongue
  • 1trachea
  • 1uterus
Project
  • 53AMP
  • 1ENCODE
  • 1LungMap
  • 1T1D
  • 1community
embeddings_underlying_assay!
  • 10X snATAC-seq
type!!!
  • Software
BIOSAMPLE
TYPE

57 results

search-icontable-tab-icon
Clear Filters
Gene expression
Accessible chromatin
tissue
heart5
islet of Langerhans22
liver4
pancreas4
artery3
primary cell
cell1
endothelial cell1
epithelial cell1
immune system1
islet of Langerhans1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego