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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1459total RNA-seq
  • 366single cell RNA-seq
  • 86RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5STARR-seq
  • 3snDrop-seq
Assay category
  • 1843Transcription
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 649February, 2021
  • 185August, 2021
  • 182May, 2021
  • 168July, 2018
  • 145May, 2020
  • 94February, 2023
  • 89August, 2017
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 14November, 2020
  • 10December, 2019
  • 9April, 2020
  • 4May, 2023
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 1478tsv
  • 1335bam
  • 1331bigWig
  • 366fastq
  • 156txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1947Homo sapiens
Biosample type
  • 1316tissue
  • 374primary cell
  • 138in vitro differentiated cells
  • 119cell line
Organ
  • 489pancreas
  • 475connective tissue
  • 400adipose tissue
  • 203epithelium
  • 190liver
  • 162heart
  • 146bone element
  • 128kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 14embryo
  • 9lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1654AMP
  • 177HPAP
  • 60T1D
  • 47KPMP
  • 9LungMap
Genome assembly (visualization)
  • 1332hg19
  • 1330GRCh38
Lab
  • 1539AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
Audit category:
  • 226inconsistent ontology term
  • 9audit script error
files.file_type!!
  • hdf5
BIOSAMPLE
ASSAY

1947 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
STARR-seq
snDrop-seq
tissue
adipose tissue382
islet of Langerhans29264
liver16711
kidney4964
bone element84
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1336
HepG292
H1-hESC8
HEK293T2
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