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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
4
WGBS
3
pCHi-C
2
Hi-C
2
RRBS
1
DNase-seq
1
single cell RNA-seq
1
total RNA-seq
Assay category
24
DNA binding
6
DNA methylation
2
3D chromatin structure
2
Transcription
1
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
3
control
1
transcription factor
Date released
28
August, 2017
3
March, 2020
2
July, 2019
1
December, 2018
1
February, 2020
1
February, 2021
1
May, 2020
1
November, 2017
Available data
bam
588
bigWig
465
fastq
407
bed narrowPeak
358
bigBed narrowPeak
166
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
38
Homo sapiens
Biosample type
33
tissue
4
cell line
1
primary cell
Organ
142
heart
92
bone element
81
connective tissue
60
pancreas
54
eye
49
adipose tissue
49
vasculature
48
blood vessel
47
epithelium
40
brain
39
artery
38
musculature of body
37
liver
19
kidney
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
3
hg19
Lab
40
Karen Mohlke, UNC
38
AMP-T2D consortium
31
Bing Ren, UCSD
files.file_type!
bam
bed bed3+
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
single cell RNA-seq
total RNA-seq
tissue
liver
23
3
1
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
1
1
1
MCF-7
1
primary cell
hepatocyte
1
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