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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
13
ATAC-seq
7
total RNA-seq
5
pCHi-C
4
WGBS
1
RNA microarray
1
RRBS
Assay category
50
DNA binding
13
DNA accessibility
7
Transcription
5
DNA methylation
Target of assay
43
histone
43
histone modification
28
broad histone mark
15
narrow histone mark
7
control
Date released
54
August, 2017
10
February, 2023
4
February, 2021
October, 2019
3
August, 2021
2
February, 2020
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
July, 2019
1
May, 2023
Available data
bam
567
bigWig
478
tsv
101
fastq
75
bed narrowPeak
bed bed3+
25
bigBed narrowPeak
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
80
Homo sapiens
Biosample type
47
tissue
30
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
253
pancreas
208
kidney
202
epithelium
181
heart
108
liver
93
bone element
80
connective tissue
48
adipose tissue
48
vasculature
47
blood vessel
39
artery
38
musculature of body
37
brain
33
eye
20
lung
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
79
AMP
2
T1D
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
77
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
files.file_type!
bam
bed bed3+
month_released!
October, 2019
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
2
1
1
1
subcutaneous adipose tissue
1
1
omental fat pad
1
in vitro differentiated cells
adipocyte
14
5
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
+ See 1 more…
primary cell
adult endothelial progenitor cell
1
cardiac fibroblast
1
megakaryocyte
1
stem cell
mesenchymal stem cell
1
See all biosamples
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