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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
8
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
22
DNA binding
8
3D chromatin structure
5
DNA methylation
3
Transcription
1
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
5
July, 2019
4
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
1
October, 2019
Available data
83
bigWig
bam
73
bed narrowPeak
60
bigBed narrowPeak
50
bed broadPeak
37
bigBed broadPeak
bed bed3+
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
4
hic
3
bedpe bed3+
2
fastq
1
tar
1
txt
Organism
40
Homo sapiens
Biosample type
37
tissue
3
primary cell
Organ
256
pancreas
210
kidney
205
epithelium
182
heart
108
liver
93
bone element
84
connective tissue
54
eye
49
adipose tissue
49
vasculature
48
blood vessel
40
brain
39
artery
38
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
21
hg19
Lab
40
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
bed bed3+
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
primary cell
endothelial cell of umbilical vein
2
skeletal muscle cell
1
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