Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1570
candidate regulatory elements
1281
target gene predictions
922
histone modifications
850
accessible chromatin
791
binding sites
660
gene expression
167
differential activity
142
eQTL
122
variant allelic effects
67
chromatin state
38
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2439
February, 2021
1523
September, 2022
376
February, 2024
373
May, 2021
330
November, 2021
283
September, 2023
262
June, 2020
132
May, 2020
128
August, 2021
94
October, 2022
90
March, 2020
88
January, 2022
70
March, 2023
60
May, 2024
55
January, 2020
54
January, 2021
48
May, 2022
46
February, 2020
44
November, 2022
32
February, 2023
29
March, 2024
28
August, 2017
18
April, 2020
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5588
bed bed3+
829
tsv
bed bed9
513
bigWig
108
txt
34
bigBed bed9
33
bed bed9+
24
csv
16
bigBed narrowPeak
bam
3
bed gappedPeak
3
xls
Organism
6600
Homo sapiens
Biosample type
2304
primary cell
2064
cell line
1848
tissue
426
in vitro differentiated cells
3
stem cell
Organ
913
epithelium
575
kidney
432
connective tissue
brain
304
musculature of body
261
pancreas
241
lung
239
vasculature
234
intestine
212
heart
194
limb
193
bodily fluid
188
embryo
184
blood
177
blood vessel
170
skin of body
145
liver
141
large intestine
113
extraembryonic component
100
eye
96
stomach
81
adipose tissue
79
uterus
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
24
lymphatic vessel
22
testis
21
nerve
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
5944
AMP
330
ENCODE
281
KPMP
58
T1D
18
LungMap
11
community
5
ITG
Genome assembly (visualization)
5688
hg19
968
GRCh38
4
hg18
files.file_type!
bam
bed bed9
organ_slims!
bone element
brain
bronchus
BIOSAMPLE
TYPE
6647 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
differential activity
eQTL
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
18
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
3
1
endothelial cell
3
9
1
15
2
9
1
2
2
common myeloid progenitor, CD34-positive
27
14
B cell
17
11
6
2
+ See 434 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
1
2
8
A549
21
19
1
1
2
K562
7
23
1
1
2
1
EndoC_BH1
1
1
8
1
8
3
1
+ See 740 more…
tissue
heart
37
20
1
5
1
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
10
1
7
1
1
lung
33
17
1
1
muscle of arm
33
16
1
1
+ See 188 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
4
1
1
4
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 118 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
See all biosamples
Download