Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
65
accessible chromatin
50
gene expression
47
target gene predictions
33
differential activity
30
candidate regulatory elements
17
eQTL
13
variant allelic effects
8
Fine-mapped variants
6
histone modifications
5
binding sites
4
chromatin state
2
sQTL
2
variant to gene
Date released
47
March, 2023
34
February, 2021
34
September, 2022
33
May, 2021
25
February, 2024
20
January, 2021
18
November, 2021
12
March, 2020
8
August, 2021
8
May, 2020
7
August, 2018
6
October, 2019
5
February, 2020
5
January, 2020
5
January, 2022
5
June, 2020
3
August, 2017
3
November, 2019
1
April, 2019
1
February, 2023
1
January, 2018
1
June, 2021
Available data
173
bed bed3+
82
tsv
59
bigWig
bed bed9
14
bigBed narrowPeak
bam
3
bed gappedPeak
3
bigBed bed9
3
csv
3
xls
Organism
282
Homo sapiens
Biosample type
125
tissue
123
primary cell
31
cell line
3
in vitro differentiated cells
Organ
906
epithelium
575
kidney
427
connective tissue
400
brain
304
musculature of body
261
pancreas
241
lung
237
vasculature
234
intestine
211
heart
194
limb
193
bodily fluid
188
embryo
184
blood
177
blood vessel
170
skin of body
143
liver
141
large intestine
113
extraembryonic component
100
eye
96
stomach
81
adipose tissue
79
uterus
75
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
lymphatic vessel
22
testis
21
nerve
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
242
AMP
20
T1D
18
ENCODE
2
community
Genome assembly (visualization)
188
hg19
55
GRCh38
files.file_type!
bam
bed bed9
BIOSAMPLE
TYPE
282 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
differential activity
candidate regulatory elements
eQTL
variant allelic effects
Fine-mapped variants
histone modifications
binding sites
chromatin state
sQTL
variant to gene
tissue
islet of Langerhans
6
11
1
13
1
2
1
2
3
2
2
tibial nerve
3
2
3
6
2
2
3
body of pancreas
2
5
8
1
1
3
pancreas
5
5
5
1
1
1
1
1
endocrine pancreas
4
7
+ See 7 more…
primary cell
pancreatic ductal cell
6
3
3
3
1
2
1
pancreatic beta cell
7
3
3
3
1
pancreatic acinar cell
6
3
3
3
1
pancreatic alpha cell
6
3
3
3
1
pancreatic delta cell
4
3
4
3
1
+ See 12 more…
cell line
EndoC_BH1
8
8
1
3
1
Panc1
2
2
8988T
1
1
HPDE6-E6E7
1
1
pancreatic acinar cell
1
+ See 1 more…
in vitro differentiated cells
pancreatic ductal cell
3
See all biosamples
Download