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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
single cell RNA-seq
3
snDrop-seq
2
DNase-seq
2
RNA microarray
2
pCHi-C
Assay category
6
Transcription
2
DNA accessibility
Date released
8
February, 2021
3
December, 2019
2
March, 2020
2
October, 2019
Available data
bam
131
bigWig
119
bed narrowPeak
104
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
24
tsv
5
csv
5
txt
bed bedMethyl
4
bigBed bedMethyl
Organism
15
Homo sapiens
Biosample type
11
tissue
2
cell line
2
primary cell
Organ
140
heart
92
bone element
85
connective tissue
59
pancreas
53
eye
50
blood vessel
50
vasculature
49
adipose tissue
43
epithelium
41
brain
39
artery
37
liver
36
musculature of body
15
kidney
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
15
AMP
Lab
142
Katalin Susztak, Upenn
47
KPMP
15
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
files.file_type!
bam
bed bedMethyl
ibed
BIOSAMPLE
ASSAY
15 results
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Clear Filters
single cell RNA-seq
snDrop-seq
DNase-seq
RNA microarray
pCHi-C
tissue
kidney
6
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
cell line
RCC 7860 VHL
1
RCC 7860 vector
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
See all biosamples
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