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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
35
ATAC-seq
3
Hi-C
2
RRBS
2
WGBS
1
single cell RNA-seq
Assay category
41
DNA binding
35
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
40
May, 2024
36
February, 2023
4
July, 2019
2
March, 2020
1
April, 2019
1
October, 2019
Available data
224
bigWig
bam
191
bed narrowPeak
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
84
Homo sapiens
Biosample type
83
tissue
1
primary cell
Organ
246
pancreas
198
kidney
197
epithelium
98
liver
93
bone element
84
heart
83
connective tissue
49
eye
46
adipose tissue
41
vasculature
40
blood vessel
36
musculature of body
35
artery
29
brain
19
lung
9
blood
9
bodily fluid
8
skeleton
5
limb
4
gonad
ovary
2
vein
1
bone marrow
1
embryo
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
84
AMP
Genome assembly (visualization)
75
GRCh38
6
hg19
Lab
44
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
bam
bed bedgraph
tsv
organ_slims!
ovary
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
WGBS
single cell RNA-seq
tissue
left cardiac atrium
40
coronary artery
35
heart left ventricle
1
1
1
2
heart
1
1
heart right ventricle
1
primary cell
cardiac fibroblast
1
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