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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
27
DNA accessibility
18
Transcription
6
DNA methylation
Date released
270
August, 2021
202
February, 2023
176
May, 2022
139
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2021
8
October, 2017
7
August, 2020
7
January, 2018
5
December, 2019
5
March, 2023
4
July, 2018
4
October, 2022
3
March, 2019
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
559
tsv
551
bigWig
89
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
139
Homo sapiens
Biosample type
93
tissue
45
primary cell
1
cell line
Organ
84
bone element
8
kidney
6
epithelium
6
pancreas
2
liver
Project
94
AMP
45
HPAP
Genome assembly (visualization)
1
hg19
Lab
94
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
files.file_type!
bam
bed bedgraph
lab.title!
Maike Sander, UCSD
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
139 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 1 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
cell line
HepG2
1
See all biosamples
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