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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ATAC-seq
68
total RNA-seq
47
WGBS
14
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
2
Capture-C
2
RRBS
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
97
DNA accessibility
68
Transcription
49
DNA methylation
14
DNA binding
9
3D chromatin structure
Target of assay
11
control
8
histone
8
histone modification
5
nucleotide modification
4
broad histone mark
4
narrow histone mark
Date released
80
May, 2022
56
February, 2023
19
September, 2020
17
May, 2021
14
August, 2017
10
November, 2020
9
March, 2020
8
January, 2021
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
March, 2019
4
October, 2019
3
October, 2022
2
February, 2020
2
July, 2019
2
November, 2019
1
August, 2022
Available data
bam
639
bigWig
495
fastq
419
tsv
228
bed narrowPeak
104
bigBed narrowPeak
80
zippedFastqFolder
30
bed bed3+
bed broadPeak
19
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
8
bigBed broadPeak
7
bedpe bed3+
7
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
251
Homo sapiens
Biosample type
152
primary cell
71
tissue
29
cell line
Organ
250
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
90
connective tissue
54
eye
51
vasculature
50
blood vessel
48
adipose tissue
42
brain
39
artery
26
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
72
AMP
28
T1D
Genome assembly (visualization)
16
hg19
13
GRCh38
Lab
152
Klaus Kaestner, Upenn
57
AMP-T2D consortium
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
bed broadPeak
BIOSAMPLE
ASSAY
252 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
19
12
14
7
4
3
1
pancreas
1
4
1
1
1
C1 segment of cervical spinal cord
1
body of pancreas
1
spleen
1
cell line
EndoC_BH1
18
6
1
2
1
Panc1
1
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