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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
28
ChIP-seq
3
Hi-C
3
WGBS
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
28
DNA binding
4
DNA methylation
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
7
control
1
transcription factor
Date released
28
August, 2017
20
May, 2022
17
August, 2021
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
614
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
167
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
73
Homo sapiens
Biosample type
52
tissue
21
cell line
Organ
241
pancreas
187
epithelium
142
kidney
102
heart
93
bone element
85
connective tissue
73
liver
47
adipose tissue
37
brain
26
eye
21
musculature of body
20
lung
13
blood vessel
13
vasculature
8
skeleton
5
gonad
5
ovary
4
artery
4
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
4
hg19
Lab
36
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
files.file_type!
bam
bed narrowPeak
month_released!
January, 2021
July, 2019
BIOSAMPLE
ASSAY
73 results
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Clear Filters
total RNA-seq
ChIP-seq
Hi-C
WGBS
pCHi-C
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
23
1
3
1
1
1
right lobe of liver
1
1
cell line
HepG2
9
5
2
2
2
1
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