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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
38
snATAC-seq
34
single cell RNA-seq
20
total RNA-seq
1
Hi-C
Assay category
77
DNA accessibility
54
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
190
August, 2021
156
May, 2022
143
February, 2021
140
February, 2023
109
August, 2017
92
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
13
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
134
zippedFastqFolder
bed narrowPeak
59
fastq
bam
50
bigWig
30
bigBed narrowPeak
7
txt
1
bed bed3+
Organism
173
Homo sapiens
Biosample type
142
primary cell
30
tissue
1
cell line
Organ
88
pancreas
80
epithelium
21
liver
8
blood
8
bodily fluid
2
musculature of body
Project
134
HPAP
23
AMP
16
T1D
Genome assembly (visualization)
1
hg19
Lab
134
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
16
Kyle Gaulton, UCSD
3
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
bed narrowPeak
BIOSAMPLE
ASSAY
173 results
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Clear Filters
WGBS
ATAC-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
primary cell
Langerhans cell
21
33
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
tissue
liver
20
islet of Langerhans
4
pancreas
4
skeletal muscle tissue
1
1
cell line
HepG2
1
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