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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
41
ChIP-seq
35
ATAC-seq
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
41
DNA binding
35
DNA accessibility
4
DNA methylation
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
4
July, 2019
3
February, 2020
3
March, 2020
1
April, 2019
Available data
224
bigWig
bam
191
bed narrowPeak
168
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
bedpe bed3+
3
hic
Organism
179
Homo sapiens
Biosample type
178
tissue
1
primary cell
Organ
250
pancreas
210
kidney
202
epithelium
179
heart
107
liver
93
bone element
90
connective tissue
54
eye
49
vasculature
48
adipose tissue
48
blood vessel
43
brain
39
artery
37
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
179
AMP
Genome assembly (visualization)
75
GRCh38
3
hg19
Lab
139
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
bam
bedpe bed3+
month_released!
May, 2020
BIOSAMPLE
ASSAY
179 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
2
right cardiac atrium
18
1
heart right ventricle
17
1
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primary cell
cardiac fibroblast
1
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