Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ATAC-seq
67
total RNA-seq
47
WGBS
20
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
95
DNA accessibility
67
Transcription
49
DNA methylation
20
DNA binding
8
3D chromatin structure
Target of assay
14
histone
14
histone modification
11
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
80
May, 2022
56
February, 2023
20
August, 2017
19
September, 2020
17
May, 2021
10
November, 2020
8
January, 2021
8
March, 2020
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
March, 2019
October, 2019
3
October, 2022
2
July, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
October, 2017
Available data
bam
615
bigWig
471
fastq
417
tsv
207
bed narrowPeak
84
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
bigBed broadPeak
6
txt
3
cool
1
bedpe
Organism
252
Homo sapiens
Biosample type
152
primary cell
73
tissue
28
cell line
Organ
253
pancreas
208
kidney
204
epithelium
180
heart
110
liver
93
bone element
87
connective tissue
50
vasculature
49
blood vessel
48
adipose tissue
40
brain
39
artery
39
musculature of body
33
eye
20
lung
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
152
HPAP
73
AMP
28
T1D
Genome assembly (visualization)
22
hg19
13
GRCh38
Lab
152
Klaus Kaestner, Upenn
57
AMP-T2D consortium
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent ontology term
4
audit script error
files.file_type!
bam
bigBed broadPeak
month_released!
April, 2019
October, 2019
BIOSAMPLE
ASSAY
253 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
17
12
20
7
4
3
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
EndoC_BH1
18
6
1
2
1
Download