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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
RRBS
Assay category
21
DNA binding
12
Transcription
2
DNA accessibility
1
DNA methylation
Target of assay
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
1
control
Date released
12
February, 2020
12
November, 2017
7
October, 2017
3
October, 2019
2
March, 2020
1
February, 2023
1
July, 2019
Available data
bam
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
38
Homo sapiens
Biosample type
38
tissue
Organ
232
pancreas
210
kidney
epithelium
141
heart
93
bone element
83
connective tissue
75
liver
54
eye
49
vasculature
48
blood vessel
46
adipose tissue
39
artery
39
brain
25
musculature of body
20
lung
8
blood
8
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
4
hg19
2
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
bigWig
month_released!
October, 2022
organ_slims!
epithelium
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
RRBS
tissue
brain
7
1
1
cingulate gyrus
5
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
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