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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
34
single cell RNA-seq
22
snATAC-seq
20
total RNA-seq
1
pCHi-C
Assay category
61
DNA accessibility
54
Transcription
41
DNA methylation
Date released
254
August, 2021
202
February, 2023
156
May, 2022
143
February, 2021
109
August, 2017
82
May, 2021
60
October, 2019
58
May, 2020
56
September, 2020
47
September, 2023
44
March, 2020
25
February, 2020
22
July, 2019
19
April, 2020
16
January, 2021
15
May, 2023
13
November, 2017
10
November, 2020
7
October, 2017
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
0
December, 2017
Available data
134
zippedFastqFolder
122
fastq
bam
110
bed narrowPeak
bigWig
50
bigBed narrowPeak
16
bed bed3+
7
txt
3
tsv
1
bedpe bed3+
Organism
157
Homo sapiens
Biosample type
134
primary cell
22
tissue
1
in vitro differentiated cells
Organ
80
epithelium
80
pancreas
20
liver
2
musculature of body
1
adipose tissue
1
connective tissue
Project
134
HPAP
23
AMP
Genome assembly (visualization)
1
hg19
Lab
134
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
3
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
bigWig
BIOSAMPLE
ASSAY
157 results
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Clear Filters
WGBS
ATAC-seq
single cell RNA-seq
snATAC-seq
total RNA-seq
pCHi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
tissue
liver
20
skeletal muscle tissue
1
1
in vitro differentiated cells
white fat cell
1
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