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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
21
total RNA-seq
20
ATAC-seq
3
WGBS
3
pCHi-C
2
Hi-C
1
DNase-seq
1
RRBS
1
single cell RNA-seq
Assay category
23
DNA binding
22
Transcription
21
DNA accessibility
4
DNA methylation
2
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
3
control
Date released
40
May, 2022
26
August, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
February, 2020
1
May, 2020
Available data
bam
637
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
179
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
16
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
75
Homo sapiens
Biosample type
71
tissue
2
cell line
2
primary cell
Organ
208
kidney
183
pancreas
182
heart
138
epithelium
93
bone element
89
connective tissue
75
liver
54
eye
51
vasculature
50
blood vessel
47
adipose tissue
42
brain
39
artery
37
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
0
embryo
Project
75
AMP
Genome assembly (visualization)
24
hg19
Lab
40
Karen Mohlke, UNC
35
AMP-T2D consortium
Bing Ren, UCSD
files.file_type!
bam
fastq
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
DNase-seq
RRBS
single cell RNA-seq
tissue
liver
23
20
20
2
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
2
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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