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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
3
3D chromatin structure
1
DNA methylation
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
March, 2020
1
July, 2019
1
October, 2019
Available data
bam
130
bigWig
108
bed narrowPeak
68
tsv
58
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
13
bed bed3+
6
tagAlign
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
hdf5
1
tar
Organism
49
Homo sapiens
Biosample type
46
tissue
3
primary cell
Organ
250
pancreas
210
kidney
205
epithelium
166
heart
99
liver
93
bone element
74
connective tissue
52
eye
49
vasculature
48
blood vessel
39
artery
38
adipose tissue
32
musculature of body
28
brain
20
lung
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
35
GRCh38
4
hg19
Lab
49
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
hdf5
organ_slims!
esophagus
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
49 results
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ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
choroid plexus epithelial cell
1
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