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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
20
ATAC-seq
7
total RNA-seq
4
WGBS
4
pCHi-C
2
Capture-C
1
RNA microarray
Assay category
51
DNA binding
20
DNA accessibility
7
Transcription
4
DNA methylation
Target of assay
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
7
control
Date released
54
August, 2017
14
February, 2023
5
August, 2021
4
February, 2021
4
October, 2019
2
February, 2020
July, 2019
2
March, 2020
1
August, 2018
1
January, 2018
1
May, 2021
1
May, 2023
Available data
bam
553
bigWig
462
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
26
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
88
Homo sapiens
Biosample type
49
tissue
38
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
248
pancreas
193
epithelium
175
heart
143
kidney
105
liver
89
connective tissue
53
eye
49
adipose tissue
45
blood vessel
45
vasculature
39
artery
38
brain
31
musculature of body
20
lung
9
blood
9
bodily fluid
5
bone element
5
gonad
5
ovary
4
limb
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
88
AMP
1
T1D
Genome assembly (visualization)
24
hg19
1
GRCh38
Lab
84
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
files.file_type!
bam
hic
txt
month_released!
July, 2019
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
1
1
subcutaneous adipose tissue
1
1
islet of Langerhans
1
omental fat pad
1
in vitro differentiated cells
adipocyte
14
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
adult endothelial progenitor cell
1
stem cell
mesenchymal stem cell
1
See all biosamples
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