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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ATAC-seq
49
total RNA-seq
19
ChIP-seq
10
MeRIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
72
DNA accessibility
57
Transcription
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
9
control
5
nucleotide modification
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
189
February, 2023
176
May, 2022
162
August, 2021
129
February, 2021
122
May, 2021
64
October, 2019
63
August, 2017
59
September, 2020
57
May, 2020
47
September, 2023
40
May, 2024
26
July, 2019
19
April, 2020
16
January, 2021
16
March, 2020
15
May, 2023
10
November, 2020
8
January, 2018
7
August, 2020
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
3
November, 2017
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
December, 2019
1
November, 2018
1
October, 2017
1
September, 2018
Available data
tsv
108
bed narrowPeak
64
xls
57
txt
bam
52
bigWig
tagAlign
6
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
vcf
Organism
171
Homo sapiens
Biosample type
134
tissue
33
cell line
5
in vitro differentiated cells
Organ
130
kidney
22
liver
13
pancreas
8
epithelium
5
connective tissue
1
adipose tissue
Project
172
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
128
Katalin Susztak, Upenn
26
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
files.file_type!
bam
tagAlign
tsv
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
MeRIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
4
1
subcutaneous adipose tissue
1
cell line
HepG2
18
2
1
1
EndoC_BH1
6
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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