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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
7
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
11
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
24
Homo sapiens
Biosample type
23
tissue
1
primary cell
Organ
248
pancreas
210
kidney
207
epithelium
182
heart
93
bone element
90
liver
65
connective tissue
54
eye
51
vasculature
50
blood vessel
41
adipose tissue
39
artery
25
brain
24
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
7
hg19
Lab
24
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
tagAlign
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
7
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
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