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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
50
total RNA-seq
10
MeRIP-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
ChIP-seq
1
RNA microarray
Assay category
156
Transcription
72
DNA accessibility
2
3D chromatin structure
1
DNA binding
Target of assay
5
control
5
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
239
August, 2021
205
February, 2023
141
February, 2021
136
May, 2022
122
May, 2021
64
October, 2019
59
September, 2020
57
May, 2020
55
August, 2017
47
September, 2023
46
March, 2020
40
May, 2024
24
February, 2020
23
July, 2019
19
April, 2020
16
January, 2021
15
May, 2023
10
November, 2020
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2017
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
November, 2018
1
October, 2017
1
September, 2018
Available data
118
tsv
91
bed narrowPeak
64
xls
57
txt
bam
35
bigWig
tagAlign
3
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
1
hic
Organism
248
Homo sapiens
Biosample type
233
tissue
11
cell line
5
in vitro differentiated cells
Organ
130
kidney
92
heart
liver
14
pancreas
8
epithelium
6
blood vessel
6
vasculature
5
connective tissue
2
artery
1
adipose tissue
Project
249
AMP
Genome assembly (visualization)
64
GRCh38
5
hg19
Lab
128
Katalin Susztak, Upenn
102
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
files.file_type!
bam
tagAlign
organ_slims!
liver
BIOSAMPLE
ASSAY
249 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
MeRIP-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
ChIP-seq
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
EndoC_BH1
6
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
See all biosamples
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