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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ATAC-seq
16
snATAC-seq
3
Hi-C
2
total RNA-seq
1
MPRA
1
pCHi-C
Assay category
71
DNA accessibility
3
3D chromatin structure
2
Transcription
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
122
May, 2021
64
October, 2019
63
August, 2017
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
10
November, 2020
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
3
November, 2017
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
October, 2017
1
September, 2018
Available data
bam
260
bigWig
189
tsv
tagAlign
27
bed narrowPeak
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
77
Homo sapiens
Biosample type
68
primary cell
8
tissue
2
cell line
Organ
11
pancreas
8
blood
8
bodily fluid
3
epithelium
1
liver
Project
59
AMP
16
T1D
3
HPAP
Genome assembly (visualization)
3
hg19
Lab
59
AMP-T2D consortium
16
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
files.file_type!
bam
tagAlign
BIOSAMPLE
ASSAY
78 results
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Clear Filters
ATAC-seq
snATAC-seq
Hi-C
total RNA-seq
MPRA
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
peripheral blood mononuclear cell
8
neutrophil
1
+ See 3 more…
tissue
islet of Langerhans
4
pancreas
4
cell line
HepG2
1
MIN6
1
See all biosamples
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