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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
10
ATAC-seq
4
WGBS
4
pCHi-C
3
total RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
51
DNA binding
10
DNA accessibility
5
DNA methylation
3
Transcription
1
3D chromatin structure
Target of assay
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
7
control
Date released
54
August, 2017
February, 2023
5
August, 2021
4
February, 2021
4
October, 2019
2
February, 2020
2
July, 2019
2
March, 2020
1
August, 2018
1
January, 2018
1
May, 2021
1
May, 2023
Available data
bam
570
bigWig
478
tsv
101
fastq
74
bed narrowPeak
28
bigBed narrowPeak
23
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
Organism
76
Homo sapiens
Biosample type
48
tissue
25
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
210
kidney
201
pancreas
155
epithelium
146
heart
110
liver
85
bone element
77
connective tissue
48
adipose tissue
42
brain
39
musculature of body
23
eye
20
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
limb
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
76
AMP
1
T1D
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
72
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
bam
tar
month_released!
February, 2023
BIOSAMPLE
ASSAY
77 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
pCHi-C
total RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
2
1
1
1
subcutaneous adipose tissue
1
1
islet of Langerhans
1
omental fat pad
1
in vitro differentiated cells
adipocyte
14
7
1
osteoblast
1
1
white fat cell
1
primary cell
adult endothelial progenitor cell
1
brain pericyte
1
cardiac fibroblast
1
stem cell
mesenchymal stem cell
1
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