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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
5
Hi-C
1
RRBS
1
pCHi-C
Assay category
35
DNA accessibility
5
3D chromatin structure
1
DNA methylation
Date released
35
February, 2023
3
July, 2019
2
March, 2020
1
May, 2021
1
October, 2019
Available data
bam
153
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
4
fastq
4
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
42
Homo sapiens
Biosample type
37
tissue
5
primary cell
Organ
235
pancreas
198
kidney
194
epithelium
93
bone element
91
liver
84
heart
80
connective tissue
49
eye
41
adipose tissue
41
vasculature
40
blood vessel
35
artery
33
musculature of body
28
brain
19
lung
9
blood
9
bodily fluid
8
skeleton
5
limb
4
gonad
4
ovary
2
vein
1
bone marrow
1
embryo
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
41
AMP
1
T1D
Genome assembly (visualization)
35
GRCh38
6
hg19
Lab
41
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
files.file_type!
bam
tsv
target.investigated_as!
control
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ATAC-seq
Hi-C
RRBS
pCHi-C
tissue
coronary artery
35
aorta
1
thymus
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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