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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
22
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
1
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
txt
Organism
38
Homo sapiens
Biosample type
37
tissue
1
primary cell
Organ
257
pancreas
207
epithelium
182
heart
148
kidney
110
liver
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
38
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
19
hg19
Lab
38
AMP-T2D consortium
files.file_type!
bam
txt
organ_slims!
large intestine
thymus
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
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