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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ATAC-seq
42
ChIP-seq
33
total RNA-seq
8
Hi-C
7
single cell RNA-seq
4
WGBS
4
pCHi-C
3
RRBS
2
STARR-seq
1
DNase-seq
Assay category
56
DNA accessibility
42
DNA binding
40
Transcription
8
3D chromatin structure
7
DNA methylation
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
36
August, 2021
35
February, 2023
28
August, 2017
5
July, 2019
5
March, 2020
4
February, 2020
2
February, 2021
1
December, 2018
1
May, 2020
1
November, 2017
1
October, 2019
Available data
bam
776
bigWig
574
bed narrowPeak
471
fastq
441
bigBed narrowPeak
242
tsv
92
tagAlign
80
bed broadPeak
80
bigBed broadPeak
25
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tar
2
hdf5
1
bed bed3
1
csv
vcf
Organism
159
Homo sapiens
Biosample type
119
tissue
34
cell line
6
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
109
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
159
AMP
Genome assembly (visualization)
45
hg19
35
GRCh38
Lab
89
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
1
audit script error
files.file_type!
bam
vcf
organ_slims!
esophagus
BIOSAMPLE
ASSAY
159 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
single cell RNA-seq
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
tissue
liver
20
23
20
1
1
3
1
1
coronary artery
35
1
aorta
1
4
1
right lobe of liver
1
1
1
pulmonary artery
2
+ See 2 more…
cell line
HepG2
19
9
2
2
2
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
hepatocyte
1
See all biosamples
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