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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
12
total RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
ATAC-seq
1
GRO-seq
Assay category
20
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
12
February, 2020
7
October, 2017
5
July, 2019
October, 2019
2
March, 2020
1
February, 2023
1
January, 2018
Available data
bam
175
bigWig
142
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
48
fastq
47
bed broadPeak
39
tsv
38
bed bed3+
38
bigBed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
41
Homo sapiens
Biosample type
36
tissue
4
primary cell
1
in vitro differentiated cells
Organ
208
kidney
181
heart
173
pancreas
124
epithelium
110
liver
93
bone element
87
connective tissue
50
vasculature
49
blood vessel
48
adipose tissue
40
brain
39
artery
39
musculature of body
33
eye
20
lung
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
41
AMP
Genome assembly (visualization)
7
hg19
1
hg18
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
zippedFastqFolder
month_released!
October, 2019
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
ATAC-seq
GRO-seq
tissue
brain
7
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 12 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
in vitro differentiated cells
pancreatic endoderm
1
See all biosamples
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