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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
4
total RNA-seq
2
Hi-C
Assay category
4
DNA accessibility
4
Transcription
2
3D chromatin structure
Date released
8
February, 2023
1
March, 2020
1
October, 2019
Available data
bam
21
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
10
Homo sapiens
Biosample type
8
tissue
2
primary cell
Organ
210
kidney
182
heart
177
pancreas
127
epithelium
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
10
AMP
Genome assembly (visualization)
6
hg19
Lab
10
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
zippedFastqFolder
BIOSAMPLE
ASSAY
10 results
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Clear Filters
ATAC-seq
total RNA-seq
Hi-C
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
primary cell
endothelial cell of umbilical vein
2
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