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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69single cell RNA-seq
  • 50ATAC-seq
  • 48snATAC-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 98DNA accessibility
  • 69Transcription
  • 13D chromatin structure
Date released
  • 93May, 2022
  • 39February, 2021
  • 25September, 2020
  • 7August, 2020
  • 1August, 2018
  • 1December, 2018
  • 1November, 2018
  • 1October, 2017
  • 1September, 2018
Available data
  • 449fastq
  • bam
  • 318bigWig
  • 180bed narrowPeak
  • 147bigBed narrowPeak
  • 140tsv
  • 94zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 169Homo sapiens
Biosample type
  • 166primary cell
  • 1cell line
  • 1in vitro differentiated cells
  • 1tissue
Organ
  • 50pancreas
  • 49epithelium
  • 1adipose tissue
  • 1connective tissue
  • 1liver
Project
  • 164HPAP
  • 5AMP
Genome assembly (visualization)
  • 11GRCh38
  • 1hg19
Lab
  • 164Klaus Kaestner, Upenn
  • 4AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
files.file_type!
  • bam
BIOSAMPLE
ASSAY

169 results

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Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell29
pancreatic beta cell16
pancreatic acinar cell4
pancreatic cell2
cell line
HepG21
in vitro differentiated cells
white fat cell1
tissue
islet of Langerhans1
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