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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
single cell RNA-seq
50
ATAC-seq
48
snATAC-seq
47
WGBS
1
Hi-C
1
pCHi-C
Assay category
98
DNA accessibility
69
Transcription
47
DNA methylation
1
3D chromatin structure
Date released
134
May, 2022
45
February, 2021
25
September, 2020
7
August, 2020
1
August, 2018
1
December, 2018
1
November, 2018
1
October, 2017
1
September, 2018
Available data
455
fastq
bam
318
bigWig
180
bed narrowPeak
147
bigBed narrowPeak
146
tsv
135
zippedFastqFolder
12
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
6
txt
5
bed bedMethyl
5
bigBed bedMethyl
2
csv
1
bedpe bed3+
Organism
216
Homo sapiens
Biosample type
213
primary cell
1
cell line
1
in vitro differentiated cells
1
tissue
Organ
97
pancreas
96
epithelium
1
adipose tissue
1
connective tissue
1
liver
Project
211
HPAP
5
AMP
Genome assembly (visualization)
11
GRCh38
1
hg19
Lab
211
Klaus Kaestner, Upenn
4
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
216 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
pCHi-C
primary cell
Langerhans cell
67
48
pancreatic alpha cell
29
31
pancreatic beta cell
16
16
pancreatic acinar cell
4
pancreatic cell
2
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
tissue
islet of Langerhans
1
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