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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 92total RNA-seq
  • 19single cell RNA-seq
  • 5GRO-seq
  • 4RRBS
  • 2ChIP-seq
  • 2WGBS
Assay category
  • 111Transcription
  • 6DNA methylation
  • 2DNA binding
Target of assay
  • 1broad histone mark
  • 1histone
  • 1histone modification
  • 1transcription factor
Date released
  • 76February, 2023
  • 35September, 2020
  • 6August, 2017
  • 5January, 2018
  • 1November, 2017
  • 1October, 2017
Available data
  • 908fastq
  • bam
  • 692bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 124Homo sapiens
Biosample type
  • 112primary cell
  • 6tissue
  • 4in vitro differentiated cells
  • 1cell line
  • 1stem cell
Organ
  • 53epithelium
  • 53pancreas
  • 3liver
  • 2musculature of body
  • 1adipose tissue
  • 1brain
  • 1connective tissue
  • 1embryo
Project
  • 111HPAP
  • 13AMP
Genome assembly (visualization)
  • 5hg18
  • 4hg19
Lab
  • 111Klaus Kaestner, Upenn
  • 13AMP-T2D consortium
Audit category:
  • 1missing controlled_by
files.file_type!
  • bam
BIOSAMPLE
ASSAY

124 results

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Clear Filters
total RNA-seq
single cell RNA-seq
GRO-seq
RRBS
ChIP-seq
WGBS
primary cell
pancreatic alpha cell42
exocrine cell39
Langerhans cell19
pancreatic beta cell11
skeletal muscle myoblast1
tissue
liver11
skeletal muscle tissue2
adipose tissue1
brain1
in vitro differentiated cells
Posterior foregut1
definitive endodermal cell1
pancreatic endoderm1
primitive gut cell1
cell line
HepG21
stem cell
hESC1
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