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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 340ATAC-seq
  • 263single cell RNA-seq
  • 232total RNA-seq
  • 223ChIP-seq
  • 87RNA microarray
  • 66snATAC-seq
  • 57WGBS
  • 39pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3DNase-seq
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 499Transcription
  • 409DNA accessibility
  • 223DNA binding
  • 79DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 182histone
  • 182histone modification
  • 93broad histone mark
  • 89narrow histone mark
  • 29control
  • 17transcription factor
  • 6RNA binding protein
  • 5nucleotide modification
Date released
  • 270August, 2021
  • 182February, 2023
  • 176May, 2022
  • 143February, 2021
  • 129August, 2017
  • 64October, 2019
  • 59September, 2020
  • 58May, 2020
  • 48March, 2020
  • 47September, 2023
  • 40May, 2024
  • 26July, 2019
  • 25February, 2020
  • 22May, 2021
  • 19April, 2020
  • 15May, 2023
  • 14November, 2017
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5March, 2023
  • 4July, 2018
  • 4March, 2019
  • 4October, 2022
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1November, 2018
  • 1September, 2018
Available data
  • bam
  • 2949bigWig
  • 1685bed narrowPeak
  • 1504tsv
  • 1334fastq
  • 1042bigBed narrowPeak
  • 322bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 155txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1392Homo sapiens
Biosample type
  • 842tissue
  • 420primary cell
  • 75cell line
  • 56in vitro differentiated cells
  • 7stem cell
Organ
  • 230pancreas
  • 210kidney
  • 207epithelium
  • 182heart
  • 110liver
  • 92bone element
  • 90connective tissue
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 20lung
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2vein
  • 1adrenal gland
  • 1blood
  • 1bodily fluid
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1003AMP
  • 324HPAP
  • 47KPMP
  • 19LungMap
  • 4community
  • 2T1D
  • 1ITG
Genome assembly (visualization)
  • 175hg19
  • 168GRCh38
  • 5hg18
Lab
  • 725AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 140inconsistent ontology term
  • 42audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

1400 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
DNase-seq
snDrop-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
...and 4 more
tissue
kidney756449611
islet of Langerhans19214114314
bone element84
liver20120233111
left cardiac atrium1840
primary cell
Langerhans cell8548
pancreatic alpha cell2942311
pancreatic beta cell1611161
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell2212
cell line
HepG2919222
EndoC_BH1181621
EndoC-BH1
HEK293T2
GM128781
in vitro differentiated cells
adipocyte81141
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
embryonic stem cell11
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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