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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
8
snATAC-seq
4
ATAC-seq
4
WGBS
3
total RNA-seq
2
pCHi-C
Assay category
36
DNA binding
12
DNA accessibility
4
DNA methylation
3
Transcription
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
40
August, 2017
8
January, 2021
2
February, 2020
2
January, 2018
1
August, 2018
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
October, 2019
Available data
bam
480
bigWig
401
tsv
104
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
57
Homo sapiens
Biosample type
47
tissue
8
primary cell
1
cell line
1
in vitro differentiated cells
Organ
252
pancreas
205
epithelium
93
bone element
90
heart
86
connective tissue
80
kidney
79
liver
54
eye
48
adipose tissue
45
vasculature
44
blood vessel
43
brain
39
musculature of body
37
artery
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
49
AMP
8
T1D
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
49
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
bam
lab.title!
Maike Sander, UCSD
month_released!
August, 2021
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
total RNA-seq
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
1
1
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
1
in vitro differentiated cells
white fat cell
1
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