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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
29
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
30
Transcription
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
31
August, 2021
28
August, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
109
Homo sapiens
Biosample type
72
tissue
35
cell line
2
primary cell
Organ
255
pancreas
210
kidney
207
epithelium
179
heart
109
liver
93
bone element
88
connective tissue
53
eye
48
vasculature
47
blood vessel
46
adipose tissue
37
artery
37
musculature of body
31
brain
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
limb
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
109
AMP
Genome assembly (visualization)
40
hg19
Lab
40
Karen Mohlke, UNC
38
AMP-T2D consortium
31
Bing Ren, UCSD
files.file_type!
bam
lab.title!
Mark McCarthy, Oxford
month_released!
August, 2018
February, 2020
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
3
1
1
1
right lobe of liver
1
1
cell line
HepG2
19
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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