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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
59
total RNA-seq
19
ChIP-seq
7
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
71
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
266
August, 2021
202
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
0
May, 2019
Available data
201
bed narrowPeak
bam
142
bigWig
123
tsv
97
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
266
Homo sapiens
Biosample type
230
tissue
36
cell line
1
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
6
blood vessel
6
vasculature
5
pancreas
2
artery
2
epithelium
1
adipose tissue
1
connective tissue
Project
267
AMP
Genome assembly (visualization)
64
GRCh38
16
hg19
Lab
128
Katalin Susztak, Upenn
103
AMP-T2D consortium
36
Bing Ren, UCSD
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
files.file_type!
bam
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
267 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
1
See all biosamples
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