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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
total RNA-seq
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
RRBS
Assay category
22
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
12
February, 2020
7
October, 2017
5
July, 2019
3
March, 2020
3
October, 2019
1
February, 2023
Available data
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
44
Homo sapiens
Biosample type
40
tissue
4
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
9
hg19
2
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
total RNA-seq
Hi-C
pCHi-C
ATAC-seq
RRBS
tissue
brain
7
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 16 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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