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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
15
RRBS
8
Hi-C
6
single cell RNA-seq
4
ATAC-seq
3
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
18
DNA methylation
8
3D chromatin structure
6
Transcription
4
DNA accessibility
Date released
129
August, 2017
103
February, 2023
102
August, 2021
98
February, 2021
64
October, 2019
58
May, 2020
48
March, 2020
26
July, 2019
25
February, 2020
22
May, 2021
14
November, 2017
8
January, 2018
7
October, 2017
5
December, 2019
4
July, 2018
2
May, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
May, 2023
1
November, 2018
1
October, 2022
1
September, 2018
Available data
bam
636
bigWig
618
tsv
89
txt
30
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
8
tagAlign
6
bed bed3+
6
csv
4
bed bedgraph
4
hdf5
2
bed bed3
2
bigBed narrowPeak
Organism
124
Homo sapiens
Biosample type
106
tissue
13
primary cell
4
in vitro differentiated cells
1
cell line
Organ
84
bone element
12
kidney
8
epithelium
6
connective tissue
5
brain
5
liver
5
musculature of body
4
heart
4
limb
3
vasculature
2
blood vessel
2
pancreas
1
eye
1
pericardium
Project
124
AMP
Genome assembly (visualization)
24
hg19
Lab
124
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
86
inconsistent ontology term
5
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
124 results
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Clear Filters
RNA microarray
RRBS
Hi-C
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
1
5
gastrocnemius medialis
4
heart left ventricle
1
2
brain
1
+ See 8 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 8 more…
in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
See all biosamples
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