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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
WGBS
3
ATAC-seq
3
total RNA-seq
2
Hi-C
2
pCHi-C
1
RNA microarray
Assay category
36
DNA binding
4
DNA methylation
3
DNA accessibility
3
Transcription
2
3D chromatin structure
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
40
August, 2017
2
February, 2020
2
March, 2020
2
October, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
Available data
bam
440
bigWig
401
tsv
44
fastq
26
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tar
Organism
50
Homo sapiens
Biosample type
48
tissue
2
primary cell
1
in vitro differentiated cells
Organ
142
heart
92
bone element
86
connective tissue
61
pancreas
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
49
epithelium
43
brain
39
artery
39
liver
39
musculature of body
19
kidney
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
organ_slims!
esophagus
BIOSAMPLE
ASSAY
51 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
3
1
1
subcutaneous adipose tissue
1
1
omental fat pad
1
primary cell
endothelial cell of umbilical vein
2
in vitro differentiated cells
white fat cell
1
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