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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ATAC-seq
15
ChIP-seq
4
total RNA-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
RRBS
Assay category
17
DNA accessibility
15
DNA binding
4
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
2
control
Date released
14
August, 2017
13
February, 2023
4
August, 2021
4
February, 2021
3
October, 2019
2
July, 2019
1
March, 2020
1
May, 2021
Available data
bam
143
bigWig
75
tsv
62
bed narrowPeak
56
fastq
21
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
42
Homo sapiens
Biosample type
37
in vitro differentiated cells
3
primary cell
1
stem cell
1
tissue
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
vasculature
50
blood vessel
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
41
AMP
1
T1D
Genome assembly (visualization)
21
hg19
Lab
37
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
files.file_type!
bam
month_released!
April, 2018
organ_slims!
adipose tissue
vasculature
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
Capture-C
pCHi-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte
8
14
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
primary cell
adult endothelial progenitor cell
1
brain pericyte
1
cardiac fibroblast
1
stem cell
mesenchymal stem cell
1
tissue
islet of Langerhans
1
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