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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ATAC-seq
56
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
74
DNA accessibility
56
Transcription
53
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
19
September, 2020
16
May, 2021
8
July, 2019
August, 2020
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
February, 2020
1
November, 2019
Available data
bam
325
bigWig
250
fastq
178
bed narrowPeak
161
tsv
102
bigBed narrowPeak
80
zippedFastqFolder
24
bed broadPeak
24
bigBed broadPeak
23
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
200
Homo sapiens
Biosample type
157
primary cell
28
cell line
16
tissue
Organ
250
pancreas
210
kidney
200
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
145
HPAP
56
AMP
Genome assembly (visualization)
28
hg19
3
GRCh38
Lab
145
Klaus Kaestner, Upenn
50
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
files.file_type!
bam
month_released!
August, 2020
BIOSAMPLE
ASSAY
201 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
24
42
31
1
pancreatic beta cell
14
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 9 more…
cell line
EndoC_BH1
18
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
tibial nerve
1
See all biosamples
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