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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
4
WGBS
3
ATAC-seq
3
total RNA-seq
2
pCHi-C
Assay category
25
DNA binding
4
DNA methylation
3
DNA accessibility
3
Transcription
Target of assay
31
histone
31
histone modification
20
broad histone mark
narrow histone mark
5
control
Date released
29
August, 2017
2
February, 2020
1
August, 2018
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
bam
423
bigWig
401
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
37
Homo sapiens
Biosample type
36
tissue
1
in vitro differentiated cells
Organ
247
pancreas
205
epithelium
93
bone element
80
kidney
74
heart
71
liver
70
connective tissue
52
eye
45
vasculature
44
blood vessel
37
adipose tissue
37
artery
32
musculature of body
31
brain
20
lung
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
37
AMP-T2D consortium
files.file_type!
bam
month_released!
August, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
WGBS
ATAC-seq
total RNA-seq
pCHi-C
tissue
subcutaneous abdominal adipose tissue
25
3
adipose tissue
1
3
1
1
omental fat pad
1
subcutaneous adipose tissue
1
in vitro differentiated cells
white fat cell
1
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