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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ATAC-seq
66
total RNA-seq
47
WGBS
24
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
RRBS
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
98
DNA accessibility
66
Transcription
49
DNA methylation
24
DNA binding
8
3D chromatin structure
Target of assay
18
histone
18
histone modification
11
control
10
narrow histone mark
8
broad histone mark
5
nucleotide modification
Date released
80
May, 2022
56
February, 2023
20
August, 2017
19
September, 2020
17
May, 2021
10
November, 2020
9
March, 2020
8
January, 2021
8
October, 2019
7
August, 2020
6
February, 2021
August, 2021
4
July, 2018
4
March, 2019
3
October, 2022
2
July, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
October, 2017
Available data
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
257
Homo sapiens
Biosample type
152
primary cell
79
tissue
27
cell line
Organ
253
pancreas
205
epithelium
93
bone element
90
heart
86
connective tissue
80
kidney
79
liver
54
eye
48
adipose tissue
45
vasculature
44
blood vessel
43
brain
39
musculature of body
37
artery
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
78
AMP
28
T1D
Genome assembly (visualization)
23
hg19
14
GRCh38
Lab
152
Klaus Kaestner, Upenn
64
AMP-T2D consortium
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
25
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
month_released!
August, 2021
BIOSAMPLE
ASSAY
258 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
RRBS
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
20
11
24
7
4
2
1
pancreas
1
4
1
1
1
body of pancreas
1
ovary
1
cell line
EndoC_BH1
18
6
1
1
Panc1
1
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