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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
65
total RNA-seq
47
WGBS
20
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
94
DNA accessibility
65
Transcription
49
DNA methylation
20
DNA binding
8
3D chromatin structure
Target of assay
14
histone
14
histone modification
11
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
80
May, 2022
56
February, 2023
20
August, 2017
19
September, 2020
17
May, 2021
10
November, 2020
8
January, 2021
March, 2020
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
March, 2019
4
October, 2019
3
October, 2022
2
July, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
October, 2017
Available data
bam
613
bigWig
471
fastq
411
tsv
211
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
248
Homo sapiens
Biosample type
152
primary cell
70
tissue
27
cell line
Organ
249
pancreas
208
kidney
204
epithelium
177
heart
108
liver
93
bone element
89
connective tissue
54
eye
48
adipose tissue
48
vasculature
47
blood vessel
41
brain
39
artery
36
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
4
gonad
4
ovary
1
bone marrow
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
1
vein
Project
152
HPAP
71
AMP
26
T1D
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
152
Klaus Kaestner, Upenn
53
AMP-T2D consortium
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
25
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
month_released!
December, 2017
March, 2020
March, 2023
BIOSAMPLE
ASSAY
249 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
18
10
20
7
4
3
1
pancreas
1
4
1
body of pancreas
1
cell line
EndoC_BH1
16
6
1
2
1
Panc1
1
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