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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ATAC-seq
67
total RNA-seq
47
WGBS
19
snATAC-seq
14
ChIP-seq
9
Hi-C
5
MeRIP-seq
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
107
DNA accessibility
67
Transcription
49
DNA methylation
14
DNA binding
9
3D chromatin structure
Target of assay
14
histone
14
histone modification
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
80
May, 2022
56
February, 2023
19
September, 2020
17
May, 2021
16
January, 2021
14
August, 2017
8
March, 2020
7
August, 2020
6
February, 2021
5
November, 2020
4
August, 2021
4
July, 2018
4
March, 2019
4
October, 2019
3
October, 2022
2
July, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
January, 2018
1
October, 2017
Available data
bam
678
bigWig
495
fastq
417
tsv
268
bed narrowPeak
145
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
21
bed broadPeak
16
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
254
Homo sapiens
Biosample type
160
primary cell
68
tissue
27
cell line
Organ
246
pancreas
210
kidney
204
epithelium
182
heart
103
liver
93
bone element
84
connective tissue
54
eye
51
vasculature
50
blood vessel
44
adipose tissue
42
brain
39
artery
36
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
67
AMP
36
T1D
Genome assembly (visualization)
24
hg19
14
GRCh38
Lab
152
Klaus Kaestner, Upenn
56
AMP-T2D consortium
35
Kyle Gaulton, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
24
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
month_released!
December, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
255 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
ChIP-seq
Hi-C
MeRIP-seq
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
tissue
islet of Langerhans
20
12
7
14
3
2
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
EndoC_BH1
18
1
3
2
1
GM12878
1
Panc1
1
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